IL_6SV4_353

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_353 not in the Motif Atlas

Homologous match to IL_8C3A_107

Geometric discrepancy: 0.1428

The information below is about IL_8C3A_107

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6SV4|1|BQ|G|2614
6SV4|1|BQ|G|2615
*
6SV4|1|BQ|C|2625
6SV4|1|BQ|A|2626
6SV4|1|BQ|C|2627

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AP

60S ribosomal protein L42-A

Chain AV

60S ribosomal protein L29

Chain BD

60S ribosomal protein L10

Chain BJ

60S ribosomal protein L21-A