IL_6SV4_361

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGG*CUUUUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|BQ|G|2828
6SV4|1|BQ|U|2829
6SV4|1|BQ|G|2830
6SV4|1|BQ|G|2831
*
6SV4|1|BQ|C|2857
6SV4|1|BQ|U|2858
6SV4|1|BQ|U|2859
6SV4|1|BQ|U|2860
6SV4|1|BQ|U|2861
6SV4|1|BQ|U|2862

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BA

60S ribosomal protein L3

Chain BD

60S ribosomal protein L10