IL_6SV4_366

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_366 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.1643

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6SV4|1|BQ|C|2889
6SV4|1|BQ|A|2890
6SV4|1|BQ|U|2891
*
6SV4|1|BQ|G|2912
6SV4|1|BQ|C|2913
6SV4|1|BQ|G|2914

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain AU

60S ribosomal protein L16-A

Chain BA

60S ribosomal protein L3