IL_6SV4_390

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

6SV4|1|BQ|U|3341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_390 not in the Motif Atlas

Geometric match to IL_1ET4_002

Geometric discrepancy: 0.3124

The information below is about IL_1ET4_002

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6SV4|1|BQ|G|3340
6SV4|1|BQ|U|3341
6SV4|1|BQ|A|3342
*
6SV4|1|BQ|U|3363
6SV4|1|BQ|C|3364

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AE

60S ribosomal protein L24-A