IL_6SV4_391

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_391 not in the Motif Atlas

Geometric match to IL_4V9F_100

Geometric discrepancy: 0.1978

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

6SV4|1|BQ|A|3342
6SV4|1|BQ|G|3343
6SV4|1|BQ|A|3344
6SV4|1|BQ|G|3345
*
6SV4|1|BQ|C|3360
6SV4|1|BQ|G|3361
6SV4|1|BQ|A|3362
6SV4|1|BQ|U|3363

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BF

60S ribosomal protein L19-A

Chain BL

60S ribosomal protein L22-A

Chain V

40S ribosomal protein S8-A