IL_6SV4_404

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

6SV4|1|YQ|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_404 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.1659

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6SV4|1|YQ|A|13
6SV4|1|YQ|U|14
6SV4|1|YQ|C|15
*
6SV4|1|YS|G|144
6SV4|1|YS|U|145

Current chains

Chain YQ

25S rRNA

Chain YS

5.8S rRNA

Nearby chains

Chain XA

60S ribosomal protein L8-A

Chain XH

60S ribosomal protein L25

Chain XQ

60S ribosomal protein L15-A