IL_6SV4_411

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGG*CUUUGUA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|YQ|U|169
6SV4|1|YQ|G|170
6SV4|1|YQ|G|171
*
6SV4|1|YQ|C|247
6SV4|1|YQ|U|248
6SV4|1|YQ|U|249
6SV4|1|YQ|U|250
6SV4|1|YQ|G|251
6SV4|1|YQ|U|252
6SV4|1|YQ|A|253

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XA

60S ribosomal protein L8-A

Chain XJ

60S ribosomal protein L13-A

Chain YP

60S ribosomal protein L35-A