IL_6SV4_417

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUU*AUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_417 not in the Motif Atlas

Homologous match to IL_5TBW_016

Geometric discrepancy: 0.0926

The information below is about IL_5TBW_016

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6SV4|1|YQ|U|429
6SV4|1|YQ|U|430
6SV4|1|YQ|U|431
*
6SV4|1|YQ|A|628
6SV4|1|YQ|U|629
6SV4|1|YQ|A|630

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XU

60S ribosomal protein L16-A

Chain YG

60S ribosomal protein L32

Chain YK

60S ribosomal protein L33-A

Chain YS

5.8S ribosomal RNA; 5.8S rRNA