IL_6SV4_426

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AU*AUU

Length

5 nucleotides

Bulged bases

6SV4|1|YQ|U|776

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_426 not in the Motif Atlas

Homologous match to IL_8C3A_027

Geometric discrepancy: 0.1884

The information below is about IL_8C3A_027

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6SV4|1|YQ|A|755
6SV4|1|YQ|U|756
*
6SV4|1|YQ|A|775
6SV4|1|YQ|U|776
6SV4|1|YQ|U|777

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XV

60S ribosomal protein L29

Chain YB

60S ribosomal protein L18-A