IL_6SV4_427

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_427 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.1433

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6SV4|1|YQ|C|758
6SV4|1|YQ|U|759
6SV4|1|YQ|G|760
6SV4|1|YQ|A|761
6SV4|1|YQ|U|762
6SV4|1|YQ|G|763
*
6SV4|1|YQ|C|768
6SV4|1|YQ|G|769
6SV4|1|YQ|G|770
6SV4|1|YQ|A|771
6SV4|1|YQ|U|772
6SV4|1|YQ|G|773

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XJ

60S ribosomal protein L13-A

Chain XP

60S ribosomal protein L42-A

Chain XR

60S ribosomal protein L28