IL_6SV4_428

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_428 not in the Motif Atlas

Homologous match to IL_8C3A_029

Geometric discrepancy: 0.1286

The information below is about IL_8C3A_029

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6SV4|1|YQ|C|803
6SV4|1|YQ|C|804
6SV4|1|YQ|G|805
*
6SV4|1|YQ|C|938
6SV4|1|YQ|U|939
6SV4|1|YQ|G|940

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XR

60S ribosomal protein L28

Chain YE

60S ribosomal protein L4-A