IL_6SV4_438
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGUAUC*GAAG
- Length
- 10 nucleotides
- Bulged bases
- 6SV4|1|YQ|A|1103
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_438 not in the Motif Atlas
- Homologous match to IL_8C3A_039
- Geometric discrepancy: 0.404
- The information below is about IL_8C3A_039
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_59027.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 1
Unit IDs
6SV4|1|YQ|C|977
6SV4|1|YQ|G|978
6SV4|1|YQ|U|979
6SV4|1|YQ|A|980
6SV4|1|YQ|U|981
6SV4|1|YQ|C|982
*
6SV4|1|YQ|G|1101
6SV4|1|YQ|A|1102
6SV4|1|YQ|A|1103
6SV4|1|YQ|G|1104
Current chains
- Chain YQ
- 25S rRNA
Nearby chains
- Chain XV
- 60S ribosomal protein L29
- Chain YB
- 60S ribosomal protein L18-A
- Chain YO
- 60S ribosomal protein L7-A
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