IL_6SV4_445

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

6SV4|1|YQ|C|1017

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_445 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.33

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6SV4|1|YQ|U|1014
6SV4|1|YQ|U|1015
6SV4|1|YQ|C|1016
6SV4|1|YQ|C|1017
6SV4|1|YQ|G|1018
*
6SV4|1|YQ|U|1034
6SV4|1|YQ|G|1035
6SV4|1|YQ|A|1036

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XG

60S ribosomal protein L11-A

Chain nb

Transfer RNA; tRNA