IL_6SV4_485

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

6SV4|1|YQ|C|2197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_485 not in the Motif Atlas

Homologous match to IL_8C3A_089

Geometric discrepancy: 0.0996

The information below is about IL_8C3A_089

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6SV4|1|YQ|C|2196
6SV4|1|YQ|C|2197
6SV4|1|YQ|A|2198
6SV4|1|YQ|G|2199
*
6SV4|1|YQ|C|2245
6SV4|1|YQ|G|2246

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain 2b

Small subunit ribosomal RNA; SSU rRNA

Chain XW

60S ribosomal protein L2-A