IL_6SV4_487

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGAAUG*CGCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|YQ|C|2204
6SV4|1|YQ|U|2205
6SV4|1|YQ|G|2206
6SV4|1|YQ|A|2207
6SV4|1|YQ|A|2208
6SV4|1|YQ|U|2209
6SV4|1|YQ|G|2210
*
6SV4|1|YQ|C|2235
6SV4|1|YQ|G|2236
6SV4|1|YQ|C|2237
6SV4|1|YQ|G|2238

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain 2b

Small subunit ribosomal RNA; SSU rRNA

Chain XW

60S ribosomal protein L2-A

Chain mb

Transfer RNA; tRNA