IL_6SV4_489

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_489 not in the Motif Atlas

Geometric match to IL_5TBW_089

Geometric discrepancy: 0.1796

The information below is about IL_5TBW_089

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

6SV4|1|YQ|G|2276
6SV4|1|YQ|C|2277
*
6SV4|1|YQ|G|2307
6SV4|1|YQ|C|2308
6SV4|1|YQ|A|2309
6SV4|1|YQ|U|2310

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XS

60S ribosomal protein L41-B

Chain nb

Transfer RNA; tRNA