IL_6SV4_495
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUAG*UGGGG
- Length
- 9 nucleotides
- Bulged bases
- 6SV4|1|YQ|G|2606
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_495 not in the Motif Atlas
- Geometric match to IL_4XWF_001
- Geometric discrepancy: 0.3373
- The information below is about IL_4XWF_001
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.1
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 44
Unit IDs
6SV4|1|YQ|C|2422
6SV4|1|YQ|U|2423
6SV4|1|YQ|A|2424
6SV4|1|YQ|G|2425
*
6SV4|1|YQ|U|2604
6SV4|1|YQ|G|2605
6SV4|1|YQ|G|2606
6SV4|1|YQ|G|2607
6SV4|1|YQ|G|2608
Current chains
- Chain YQ
- 25S rRNA
Nearby chains
- Chain XP
- 60S ribosomal protein L42-A
- Chain XQ
- 60S ribosomal protein L15-A
- Chain XW
- 60S ribosomal protein L2-A
- Chain mb
- Transfer RNA; tRNA
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