IL_6SV4_503

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCU*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_503 not in the Motif Atlas

Geometric match to IL_5TBW_103

Geometric discrepancy: 0.1134

The information below is about IL_5TBW_103

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6SV4|1|YQ|G|2824
6SV4|1|YQ|C|2825
6SV4|1|YQ|U|2826
*
6SV4|1|YQ|G|2863
6SV4|1|YQ|A|2864
6SV4|1|YQ|U|2865

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XV

60S ribosomal protein L29

Chain YD

60S ribosomal protein L10