IL_6SV4_535
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAG*CGAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_535 not in the Motif Atlas
- Geometric match to IL_4V9F_100
- Geometric discrepancy: 0.1941
- The information below is about IL_4V9F_100
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.1
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 44
Unit IDs
6SV4|1|YQ|A|3342
6SV4|1|YQ|G|3343
6SV4|1|YQ|A|3344
6SV4|1|YQ|G|3345
*
6SV4|1|YQ|C|3360
6SV4|1|YQ|G|3361
6SV4|1|YQ|A|3362
6SV4|1|YQ|U|3363
Current chains
- Chain YQ
- 25S rRNA
Nearby chains
- Chain Vb
- 40S ribosomal protein S8-A
- Chain XE
- 60S ribosomal protein L24-A
- Chain YF
- 60S ribosomal protein L19-A
- Chain YL
- 60S ribosomal protein L22-A
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