IL_6SV4_548
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUC*GU
- Length
- 5 nucleotides
- Bulged bases
- 6SV4|1|ZQ|U|14
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_548 not in the Motif Atlas
- Homologous match to IL_8C3A_003
- Geometric discrepancy: 0.1234
- The information below is about IL_8C3A_003
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
6SV4|1|ZQ|A|13
6SV4|1|ZQ|U|14
6SV4|1|ZQ|C|15
*
6SV4|1|ZS|G|144
6SV4|1|ZS|U|145
Current chains
- Chain ZQ
- 25S rRNA
- Chain ZS
- 5.8S rRNA
Nearby chains
- Chain zA
- 60S ribosomal protein L8-A
- Chain zH
- 60S ribosomal protein L25
- Chain zQ
- 60S ribosomal protein L15-A
Coloring options: