IL_6SV4_550
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 6SV4|1|ZQ|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_550 not in the Motif Atlas
- Geometric match to IL_5TBW_005
- Geometric discrepancy: 0.1348
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6SV4|1|ZQ|C|31
6SV4|1|ZQ|U|32
6SV4|1|ZQ|G|33
6SV4|1|ZQ|A|34
6SV4|1|ZQ|A|35
6SV4|1|ZQ|C|36
6SV4|1|ZQ|U|37
6SV4|1|ZQ|U|38
*
6SV4|1|ZQ|A|45
6SV4|1|ZQ|U|46
6SV4|1|ZQ|C|47
6SV4|1|ZQ|A|48
6SV4|1|ZQ|A|49
6SV4|1|ZQ|U|50
6SV4|1|ZQ|A|51
6SV4|1|ZQ|A|52
6SV4|1|ZQ|G|53
Current chains
- Chain ZQ
- 25S rRNA
Nearby chains
- Chain zF
- 60S ribosomal protein L37-A
- Chain zJ
- 60S ribosomal protein L13-A
- Chain zP
- 60S ribosomal protein L42-A
- Chain zQ
- 60S ribosomal protein L15-A
- Chain zR
- 60S ribosomal protein L28
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