IL_6SV4_560
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_560 not in the Motif Atlas
- Geometric match to IL_5TBW_015
- Geometric discrepancy: 0.116
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6SV4|1|ZQ|G|404
6SV4|1|ZQ|U|405
6SV4|1|ZQ|G|406
6SV4|1|ZQ|A|407
6SV4|1|ZQ|A|408
6SV4|1|ZQ|A|409
6SV4|1|ZQ|U|410
*
6SV4|1|ZS|A|13
6SV4|1|ZS|C|14
6SV4|1|ZS|G|15
6SV4|1|ZS|G|16
6SV4|1|ZS|A|17
6SV4|1|ZS|U|18
6SV4|1|ZS|C|19
Current chains
- Chain ZQ
- 25S rRNA
- Chain ZS
- 5.8S rRNA
Nearby chains
- Chain ZE
- 60S ribosomal protein L4-A
- Chain ZG
- 60S ribosomal protein L32
- Chain zX
- 60S ribosomal protein L17-A
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