IL_6SV4_561
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUU*AUA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_561 not in the Motif Atlas
- Homologous match to IL_5TBW_016
- Geometric discrepancy: 0.1133
- The information below is about IL_5TBW_016
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6SV4|1|ZQ|U|429
6SV4|1|ZQ|U|430
6SV4|1|ZQ|U|431
*
6SV4|1|ZQ|A|628
6SV4|1|ZQ|U|629
6SV4|1|ZQ|A|630
Current chains
- Chain ZQ
- 25S rRNA
Nearby chains
- Chain ZG
- 60S ribosomal protein L32
- Chain ZK
- 60S ribosomal protein L33-A
- Chain ZS
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain zU
- 60S ribosomal protein L16-A
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