IL_6SV4_562

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGACAGG*CAUAAUG

Length

15 nucleotides

Bulged bases

6SV4|1|ZQ|A|440, 6SV4|1|ZQ|G|494

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_562 not in the Motif Atlas

Homologous match to IL_5TBW_017

Geometric discrepancy: 0.403

The information below is about IL_5TBW_017

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_33557.1

Basepair signature

cWW-tHH-R-L-R-L-L-R-L-R-cWW

Number of instances in this motif group

1

Unit IDs

6SV4|1|ZQ|C|435
6SV4|1|ZQ|A|436
6SV4|1|ZQ|G|437
6SV4|1|ZQ|A|438
6SV4|1|ZQ|C|439
6SV4|1|ZQ|A|440
6SV4|1|ZQ|G|494
6SV4|1|ZQ|G|495
*
6SV4|1|ZQ|C|618
6SV4|1|ZQ|A|619
6SV4|1|ZQ|U|620
6SV4|1|ZQ|A|621
6SV4|1|ZQ|A|622
6SV4|1|ZQ|U|623
6SV4|1|ZQ|G|624

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain ZG

60S ribosomal protein L32

Chain ZK

60S ribosomal protein L33-A

Chain zX

60S ribosomal protein L17-A