IL_6SV4_566
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUC*GCU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_566 not in the Motif Atlas
- Homologous match to IL_5TBW_021
- Geometric discrepancy: 0.1463
- The information below is about IL_5TBW_021
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6SV4|1|ZQ|G|668
6SV4|1|ZQ|U|669
6SV4|1|ZQ|C|670
*
6SV4|1|ZQ|G|792
6SV4|1|ZQ|C|793
6SV4|1|ZQ|U|794
Current chains
- Chain ZQ
- 25S rRNA
Nearby chains
- Chain ZB
- 60S ribosomal protein L18-A
- Chain ZE
- 60S ribosomal protein L4-A
- Chain zJ
- 60S ribosomal protein L13-A
- Chain zR
- 60S ribosomal protein L28
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