IL_6SV4_567
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUUUG*CAUAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_567 not in the Motif Atlas
- Homologous match to IL_5TBW_022
- Geometric discrepancy: 0.1557
- The information below is about IL_5TBW_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74284.1
- Basepair signature
- cWW-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SV4|1|ZQ|G|680
6SV4|1|ZQ|U|681
6SV4|1|ZQ|U|682
6SV4|1|ZQ|U|683
6SV4|1|ZQ|G|684
*
6SV4|1|ZQ|C|696
6SV4|1|ZQ|A|697
6SV4|1|ZQ|U|698
6SV4|1|ZQ|A|699
6SV4|1|ZQ|C|700
Current chains
- Chain ZQ
- 25S rRNA
Nearby chains
- Chain ZE
- 60S ribosomal protein L4-A
- Chain zJ
- 60S ribosomal protein L13-A
- Chain zQ
- 60S ribosomal protein L15-A
- Chain zR
- 60S ribosomal protein L28
Coloring options: