IL_6SV4_574

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

6SV4|1|ZQ|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_574 not in the Motif Atlas

Geometric match to IL_4V9F_025

Geometric discrepancy: 0.1665

The information below is about IL_4V9F_025

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

6SV4|1|ZQ|A|828
6SV4|1|ZQ|U|829
*
6SV4|1|ZQ|A|895
6SV4|1|ZQ|A|896
6SV4|1|ZQ|U|897

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain ZN

60S ribosomal protein L34-A

Chain zW

60S ribosomal protein L2-A