IL_6SV4_577

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUU*AUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_577 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.0995

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6SV4|1|ZQ|G|869
6SV4|1|ZQ|G|870
6SV4|1|ZQ|U|871
6SV4|1|ZQ|U|872
*
6SV4|1|ZQ|A|888
6SV4|1|ZQ|U|889
6SV4|1|ZQ|C|890

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain zF

60S ribosomal protein L37-A