IL_6SV4_591

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUAC*GAA

Length

7 nucleotides

Bulged bases

6SV4|1|ZQ|A|1075

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_591 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.3505

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

28

Unit IDs

6SV4|1|ZQ|U|1073
6SV4|1|ZQ|U|1074
6SV4|1|ZQ|A|1075
6SV4|1|ZQ|C|1076
*
6SV4|1|ZQ|G|1083
6SV4|1|ZQ|A|1084
6SV4|1|ZQ|A|1085

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain ZI

60S ribosomal protein L5

Chain ZJ

60S ribosomal protein L21-A

Chain zV

60S ribosomal protein L29