IL_6SV4_608

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCAAC*GGAC

Length

10 nucleotides

Bulged bases

6SV4|1|ZQ|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_608 not in the Motif Atlas

Homologous match to IL_8C3A_066

Geometric discrepancy: 0.1278

The information below is about IL_8C3A_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93630.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

6SV4|1|ZQ|G|1500
6SV4|1|ZQ|U|1501
6SV4|1|ZQ|C|1502
6SV4|1|ZQ|A|1503
6SV4|1|ZQ|A|1504
6SV4|1|ZQ|C|1505
*
6SV4|1|ZQ|G|1513
6SV4|1|ZQ|G|1514
6SV4|1|ZQ|A|1515
6SV4|1|ZQ|C|1516

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain ZF

60S ribosomal protein L19-A

Chain zL

60S ribosomal protein L39

Chain zX

60S ribosomal protein L17-A