IL_6SV4_614

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_614 not in the Motif Atlas

Homologous match to IL_8C3A_074

Geometric discrepancy: 0.1298

The information below is about IL_8C3A_074

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6SV4|1|ZQ|G|1661
6SV4|1|ZQ|G|1662
6SV4|1|ZQ|C|1663
*
6SV4|1|ZQ|G|1786
6SV4|1|ZQ|A|1787
6SV4|1|ZQ|C|1788

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain ZF

60S ribosomal protein L19-A

Chain ZN

60S ribosomal protein L34-A

Chain zT

60S ribosomal protein L43-A