IL_6SV4_625

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_625 not in the Motif Atlas

Homologous match to IL_8C3A_085

Geometric discrepancy: 0.1564

The information below is about IL_8C3A_085

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6SV4|1|ZQ|G|1940
6SV4|1|ZQ|C|1941
6SV4|1|ZQ|U|1942
*
6SV4|1|ZQ|A|2106
6SV4|1|ZQ|A|2107
6SV4|1|ZQ|C|2108

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain 2c

Small subunit ribosomal RNA; SSU rRNA

Chain Vc

40S ribosomal protein S8-A

Chain ZF

60S ribosomal protein L19-A