IL_6SV4_627
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CU*GAG
- Length
- 5 nucleotides
- Bulged bases
- 6SV4|1|ZQ|A|2324
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_627 not in the Motif Atlas
- Homologous match to IL_5TBW_082
- Geometric discrepancy: 0.1272
- The information below is about IL_5TBW_082
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
6SV4|1|ZQ|C|2128
6SV4|1|ZQ|U|2129
*
6SV4|1|ZQ|G|2323
6SV4|1|ZQ|A|2324
6SV4|1|ZQ|G|2325
Current chains
- Chain ZQ
- 25S rRNA
Nearby chains
- Chain zS
- 60S ribosomal protein L41-B
Coloring options: