IL_6SV4_633

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_633 not in the Motif Atlas

Homologous match to IL_8C3A_094

Geometric discrepancy: 0.1233

The information below is about IL_8C3A_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

6SV4|1|ZQ|G|2276
6SV4|1|ZQ|C|2277
*
6SV4|1|ZQ|G|2307
6SV4|1|ZQ|C|2308
6SV4|1|ZQ|A|2309
6SV4|1|ZQ|U|2310

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain nc

Transfer RNA; tRNA

Chain zS

60S ribosomal protein L41-B