IL_6SV4_641
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GG*CAC
- Length
- 5 nucleotides
- Bulged bases
- 6SV4|1|ZQ|A|2626
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_641 not in the Motif Atlas
- Homologous match to IL_8C3A_107
- Geometric discrepancy: 0.0882
- The information below is about IL_8C3A_107
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
6SV4|1|ZQ|G|2614
6SV4|1|ZQ|G|2615
*
6SV4|1|ZQ|C|2625
6SV4|1|ZQ|A|2626
6SV4|1|ZQ|C|2627
Current chains
- Chain ZQ
- 25S rRNA
Nearby chains
- Chain ZD
- 60S ribosomal protein L10
- Chain ZJ
- 60S ribosomal protein L21-A
- Chain zP
- 60S ribosomal protein L42-A
- Chain zV
- 60S ribosomal protein L29
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