IL_6SV4_650

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_650 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1409

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6SV4|1|ZQ|U|2835
6SV4|1|ZQ|C|2836
6SV4|1|ZQ|A|2837
6SV4|1|ZQ|A|2838
6SV4|1|ZQ|G|2839
*
6SV4|1|ZQ|C|2849
6SV4|1|ZQ|G|2850
6SV4|1|ZQ|A|2851
6SV4|1|ZQ|C|2852
6SV4|1|ZQ|A|2853

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain ZD

60S ribosomal protein L10

Chain zO

Ubiquitin-60S ribosomal protein L40