IL_6SV4_669
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAACG*UUG
- Length
- 8 nucleotides
- Bulged bases
- 6SV4|1|ZQ|U|3259
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_669 not in the Motif Atlas
- Homologous match to IL_8C3A_133
- Geometric discrepancy: 0.3841
- The information below is about IL_8C3A_133
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60154.1
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
6SV4|1|ZQ|C|3225
6SV4|1|ZQ|A|3226
6SV4|1|ZQ|A|3227
6SV4|1|ZQ|C|3228
6SV4|1|ZQ|G|3229
*
6SV4|1|ZQ|U|3258
6SV4|1|ZQ|U|3259
6SV4|1|ZQ|G|3260
Current chains
- Chain ZQ
- 25S rRNA
Nearby chains
- Chain ZK
- 60S ribosomal protein L33-A
- Chain ZM
- 60S ribosomal protein L6-A
- Chain zM
- 60S ribosomal protein L14-A
- Chain zU
- 60S ribosomal protein L16-A
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