IL_6SV4_689
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GU*AUC
- Length
- 5 nucleotides
- Bulged bases
- 6SV4|1|ZS|U|90
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_689 not in the Motif Atlas
- Homologous match to IL_5TBW_146
- Geometric discrepancy: 0.1268
- The information below is about IL_5TBW_146
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
6SV4|1|ZS|G|68
6SV4|1|ZS|U|69
*
6SV4|1|ZS|A|89
6SV4|1|ZS|U|90
6SV4|1|ZS|C|91
Current chains
- Chain ZS
- 5.8S rRNA
Nearby chains
- Chain ZP
- 60S ribosomal protein L35-A
- Chain ZQ
- Large subunit ribosomal RNA; LSU rRNA
- Chain zF
- 60S ribosomal protein L37-A
- Chain zK
- 60S ribosomal protein L26-A
- Chain zL
- 60S ribosomal protein L39
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