IL_6SV4_697

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCUAACCUUGAGUC*GGCUCUUGGCGAAC

Length

28 nucleotides

Bulged bases

6SV4|1|2b|U|705, 6SV4|1|2b|G|729, 6SV4|1|2b|A|734

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|2b|G|703
6SV4|1|2b|C|704
6SV4|1|2b|U|705
6SV4|1|2b|A|706
6SV4|1|2b|A|707
6SV4|1|2b|C|708
6SV4|1|2b|C|709
6SV4|1|2b|U|710
6SV4|1|2b|U|711
6SV4|1|2b|G|712
6SV4|1|2b|A|713
6SV4|1|2b|G|714
6SV4|1|2b|U|715
6SV4|1|2b|C|716
*
6SV4|1|2b|G|722
6SV4|1|2b|G|723
6SV4|1|2b|C|724
6SV4|1|2b|U|725
6SV4|1|2b|C|726
6SV4|1|2b|U|727
6SV4|1|2b|U|728
6SV4|1|2b|G|729
6SV4|1|2b|G|730
6SV4|1|2b|C|731
6SV4|1|2b|G|732
6SV4|1|2b|A|733
6SV4|1|2b|A|734
6SV4|1|2b|C|735

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain AN

60S ribosomal protein L27-A

Chain Sb

40S ribosomal protein S4-A