IL_6SV4_706

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGAC*GUUUUC

Length

11 nucleotides

Bulged bases

6SV4|1|2c|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|2c|G|866
6SV4|1|2c|G|867
6SV4|1|2c|G|868
6SV4|1|2c|A|869
6SV4|1|2c|C|870
*
6SV4|1|2c|G|957
6SV4|1|2c|U|958
6SV4|1|2c|U|959
6SV4|1|2c|U|960
6SV4|1|2c|U|961
6SV4|1|2c|C|962

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Yc

40S ribosomal protein S13

Chain bc

40S ribosomal protein S22-A

Chain fc

40S ribosomal protein S27-A