IL_6SV4_707

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAUC*GGCAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|2c|G|1041
6SV4|1|2c|G|1042
6SV4|1|2c|A|1043
6SV4|1|2c|U|1044
6SV4|1|2c|C|1045
*
6SV4|1|2c|G|1073
6SV4|1|2c|G|1074
6SV4|1|2c|C|1075
6SV4|1|2c|A|1076
6SV4|1|2c|C|1077

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Pc

40S ribosomal protein S0-A

Chain Qc

40S ribosomal protein S1-A

Chain Yc

40S ribosomal protein S13

Chain ec

40S ribosomal protein S26-A

Chain fc

40S ribosomal protein S27-A