IL_6SV4_708

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GACA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|2c|G|1233
6SV4|1|2c|A|1234
6SV4|1|2c|C|1235
6SV4|1|2c|A|1236
*
6SV4|1|2c|U|1249
6SV4|1|2c|U|1250
6SV4|1|2c|U|1251
6SV4|1|2c|C|1252

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Cc

40S ribosomal protein S10-A

Chain Dc

40S ribosomal protein S12

Chain Ec

40S ribosomal protein S15

Chain Nc

Ubiquitin-40S ribosomal protein S31