IL_6SV4_709
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGCAUGGC*GUCUGUGAUG
- Length
- 18 nucleotides
- Bulged bases
- 6SV4|1|2c|C|1274, 6SV4|1|2c|U|1432, 6SV4|1|2c|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_709 not in the Motif Atlas
- Homologous match to IL_8C3A_505
- Geometric discrepancy: 0.2066
- The information below is about IL_8C3A_505
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06463.1
- Basepair signature
- cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
6SV4|1|2c|U|1272
6SV4|1|2c|G|1273
6SV4|1|2c|C|1274
6SV4|1|2c|A|1275
6SV4|1|2c|U|1276
6SV4|1|2c|G|1277
6SV4|1|2c|G|1278
6SV4|1|2c|C|1279
*
6SV4|1|2c|G|1429
6SV4|1|2c|U|1430
6SV4|1|2c|C|1431
6SV4|1|2c|U|1432
6SV4|1|2c|G|1433
6SV4|1|2c|U|1434
6SV4|1|2c|G|1435
6SV4|1|2c|A|1436
6SV4|1|2c|U|1437
6SV4|1|2c|G|1438
Current chains
- Chain 2c
- 18S rRNA
Nearby chains
- Chain Ac
- 40S ribosomal protein S3
- Chain Cc
- 40S ribosomal protein S10-A
- Chain Jc
- 40S ribosomal protein S20
- Chain Mc
- 40S ribosomal protein S29-A
- Chain nc
- Transfer RNA; tRNA
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