IL_6SV4_725

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUAGACAGC*GCCGAA

Length

16 nucleotides

Bulged bases

6SV4|1|YQ|A|1221

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|YQ|U|1218
6SV4|1|YQ|C|1219
6SV4|1|YQ|U|1220
6SV4|1|YQ|A|1221
6SV4|1|YQ|G|1222
6SV4|1|YQ|A|1223
6SV4|1|YQ|C|1224
6SV4|1|YQ|A|1225
6SV4|1|YQ|G|1226
6SV4|1|YQ|C|1227
*
6SV4|1|YQ|G|1282
6SV4|1|YQ|C|1283
6SV4|1|YQ|C|1284
6SV4|1|YQ|G|1285
6SV4|1|YQ|A|1286
6SV4|1|YQ|A|1287

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain YH

60S ribosomal protein L20-A

Chain YU

60S acidic ribosomal protein P0