IL_6SV4_741

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAUUGUAAG*CUGAGAUUAAGC

Length

22 nucleotides

Bulged bases

6SV4|1|ZQ|G|3369, 6SV4|1|ZQ|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|ZQ|G|3328
6SV4|1|ZQ|U|3329
6SV4|1|ZQ|A|3330
6SV4|1|ZQ|U|3331
6SV4|1|ZQ|U|3332
6SV4|1|ZQ|G|3333
6SV4|1|ZQ|U|3334
6SV4|1|ZQ|A|3335
6SV4|1|ZQ|A|3336
6SV4|1|ZQ|G|3337
*
6SV4|1|ZQ|C|3367
6SV4|1|ZQ|U|3368
6SV4|1|ZQ|G|3369
6SV4|1|ZQ|A|3370
6SV4|1|ZQ|G|3371
6SV4|1|ZQ|A|3372
6SV4|1|ZQ|U|3373
6SV4|1|ZQ|U|3374
6SV4|1|ZQ|A|3375
6SV4|1|ZQ|A|3376
6SV4|1|ZQ|G|3377
6SV4|1|ZQ|C|3378

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain ZA

60S ribosomal protein L3

Chain ZC

60S ribosomal protein L31-A

Chain zE

60S ribosomal protein L24-A