IL_6SV4_746

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_746 not in the Motif Atlas

Homologous match to IL_8CRE_428

Geometric discrepancy: 0.1158

The information below is about IL_8CRE_428

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

6SV4|1|2b|A|746
6SV4|1|2b|C|747
*
6SV4|1|2b|G|802
6SV4|1|2b|A|803
6SV4|1|2b|A|804
6SV4|1|2b|U|805

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Ub

40S ribosomal protein S7-A

Chain Xb

40S ribosomal protein S11-A

Chain bb

40S ribosomal protein S22-A

Chain cb

40S ribosomal protein S23-A