IL_6SV4_755

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

6SV4|1|BQ|U|1015, 6SV4|1|BQ|C|1016, 6SV4|1|BQ|C|1017

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_755 not in the Motif Atlas

Geometric match to IL_4M4O_004

Geometric discrepancy: 0.3055

The information below is about IL_4M4O_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6SV4|1|BQ|U|1014
6SV4|1|BQ|U|1015
6SV4|1|BQ|C|1016
6SV4|1|BQ|C|1017
6SV4|1|BQ|G|1018
*
6SV4|1|BQ|U|1034
6SV4|1|BQ|G|1035
6SV4|1|BQ|A|1036

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BI

60S ribosomal protein L5