IL_6SWA_011

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGACC*GUCUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_011 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3161

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6SWA|1|q|A|160
6SWA|1|q|G|161
6SWA|1|q|A|162
6SWA|1|q|C|163
6SWA|1|q|C|164
*
6SWA|1|q|G|263
6SWA|1|q|U|264
6SWA|1|q|C|265
6SWA|1|q|U|266
6SWA|1|q|U|267

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain K

60S ribosomal protein L13

Chain f

60S ribosomal protein L35

Chain g

60S ribosomal protein L36