IL_6SWA_019

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCC*GCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_019 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3227

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6SWA|1|q|C|450
6SWA|1|q|G|451
6SWA|1|q|C|452
6SWA|1|q|C|453
*
6SWA|1|q|G|689
6SWA|1|q|C|690
6SWA|1|q|G|691
6SWA|1|q|G|692

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain E

60S ribosomal protein L6

Chain c

60S ribosomal protein L32

Chain p

60S ribosomal protein L28