IL_6SWA_031

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCC*GUCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_031 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3662

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6SWA|1|q|C|513
6SWA|1|q|C|514
6SWA|1|q|C|515
*
6SWA|1|q|G|632
6SWA|1|q|U|633
6SWA|1|q|C|634
6SWA|1|q|G|635
6SWA|1|q|G|636

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain K

60S ribosomal protein L13